One of the things I do on a daily basis is use Favorites. If I create a new document, passage guide, search, layout - the first thing I do is click on the tab and Ctrl + D (Cmd + D for Mac) and what this does is create a bookmark in my logos favorites folder and then I organize them from there. Try it today - open up Favorites then go to a place in your favorite book, bible, note file etc... and hit the key combo Ctrl + D and see a bookmark appear at the bottom of your favorites. Then sort and organize appropriately.